1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGGTTTCTCGTGGCACCGTTGGCCGCCTTGTAGTCCGGGCAGTGGCCTCACCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgcaattggcaatttcttccagttgtttctatgcctgggggcgcagcttcttcgcccgcaggcctgtcgcactaacaccccgaccattgaattcacattgtgcctcacag
species | Chlamydomonas reinhardtii |
transcript | EDP04078 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|49467835|gb|BP095696.1|BP095696
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|22069210|gb|BQ818869.1|BQ818869
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|22070606|gb|BQ819944.1|BQ819944
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|22064314|gb|BQ815735.1|BQ815735
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|10787327|gb|AV643999.1|AV643999
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAACAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|15700901|gb|BI725206.1|BI725206
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|15700902|gb|BI725207.1|BI725207
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGAEST: gi|15700900|gb|BI725205.1|BI725205
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
EST: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGG AGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
genomic: CCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgc ... tgcctcacagAGTGCAGCAGCCTGTTTACTTCGCGGACTCCGTGGCGAGTGTGAGCATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTTTCTCGTGGCACCGTTGGCCGCCTTGTAGTCCGGGCAGTGGCCTCACCACCAAAGATGGACACGGAAGCAGCAGCTTTAAAGGCAAAAGCCAGCGGgtgcgtgcgcaattggcaatttcttccagttgtttctatgcctgggggcgcagcttcttcgcccgcaggcctgtcgcactaacaccccgaccattgaattcacattgtgcctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT