1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGCTGTCTGTTAGTGTCTCTCCGGCCCTATAACATGGCCAGCCTTCAGGAGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgttgttatggcttaagtatggtggcgttcaggatcacggattcttggagcagctgttgacgtctcgactgcaccctccgcccatttgccccccacag
species | Chlamydomonas reinhardtii |
transcript | EDP04033 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCAC GAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGTEST: gi|16431361|gb|BI996587.1|BI996587
genomic: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgtt ... ccccccacagGAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGT
EST: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCAC GAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGTEST: gi|15691915|gb|BI716220.1|BI716220
genomic: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgtt ... ccccccacagGAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGT
EST: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCAC GAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGTEST: gi|10794304|gb|AV631670.1|AV631670
genomic: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgtt ... ccccccacagGAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGT
EST: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCAC GAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGTEST: gi|10125947|gb|BE724651.1|BE724651
genomic: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgtt ... ccccccacagGAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGT
EST: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCAC GAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGT
genomic: AGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgtt ... ccccccacagGAGTTTGGAAACATGTACAGATGCGCGACGTCTGGCCTTGTGCACATATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGTCTGTTAGTGTCTCTCCGGCCCTATAACATGGCCAGCCTTCAGGAGCAGCTCAACTGTGGGCACGTCTGCAACCACACTTGCTGCGTTCAGCACgtaggtcgttgttatggcttaagtatggtggcgttcaggatcacggattcttggagcagctgttgacgtctcgactgcaccctccgcccatttgccccccacag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC