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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGCCAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttcttctcgccgacgcatttctctcgctgcttctagactgaacccgcctgcccacctggcctagcaccactcgcccagatcagcgtctgatcgctatgtttgtcaatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP03982
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10788056|gb|AV644728.1|AV644728
EST:     GTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: GTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|10782915|gb|AV639587.1|AV639587
EST:     GTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: GTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|10786054|gb|AV642726.1|AV642726
EST:     CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|49467062|gb|BP094975.1|BP094975
EST:     CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|6552100|gb|AV397884.1|AV397884
EST:     CATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|22051882|gb|BQ809934.1|BQ809934
EST:     GCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: GCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|6547392|gb|AV393176.1|AV393176
EST:     TAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: TAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|49465381|gb|BP093294.1|BP093294
EST:     CATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|6546630|gb|AV392414.1|AV392414
EST:     CATATTCCTGCAGTCATGGCATGGCTCCCAGTATGTCTG                         GTCGTTCCAGGCGAATGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGC
genomic: CATATTCCTGCAGTCATGGCA-GGCACCCAG-ATG-C-Ggtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAA-GTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGC
EST: gi|49460469|gb|BP088382.1|BP088382
EST:     CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
EST: gi|15702828|gb|BI727133.1|BI727133
EST:     CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCG                         GTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG
genomic: CAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttctt ... gtcaatgcagGTCGTTCCAGGCGAAGTCGGCGGCCTCGGCTCGCGGCGCCGTCCGTGGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCAGCCAGTCTGCTAGTTTTCATATTCCTGCAGTCATGGCAGGCACCCAGATGCGgtgagttcttctcgccgacgcatttctctcgctgcttctagactgaacccgcctgcccacctggcctagcaccactcgcccagatcagcgtctgatcgctatgtttgtcaatgcag

- - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - -  CAGATG