1 5' 3' | 2 5' 3' | 3 5' 3' |
ACAAATAATCAAAGGGAAAACCAAGTTGGACAAACTTGAAGAGGTGAAGAACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctggctataatgatacaggcttgggaaggagtctcagcaggaacctgtgtcatgggagataggaaggcgtgggggtgggaagcggtggcggtgc...
species | Chlamydomonas reinhardtii |
transcript | EDP03834 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAG CTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTGEST: gi|22065971|gb|BQ816670.1|BQ816670
genomic: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctgg ... tgcactgtagCTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTG
EST: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAT CTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTGEST: gi|23360669|gb|BU648489.1|BU648489
genomic: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctgg ... tgcactgtagCTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTG
EST: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAG CTGCCGAACTTGGAGGTGCTGTCGCTGTCAGTGAACCGGCTGGCGAGCCTGEST: gi|8400952|gb|BE056586.1|BE056586
genomic: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctgg ... tgcactgtagCTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTG
EST: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAG CTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTGEST: gi|16437845|gb|BM003065.1|BM003065
genomic: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctgg ... tgcactgtagCTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCCTG
EST: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAG CTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCC
genomic: ACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctgg ... tgcactgtagCTGCCGAACTTGGAGGTGCTGTCGCTGTCGGTGAACCGGCTGGCGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAATAATCAAAGGGAAAACCAAGTTGGACAAACTTGAAGAGGTGAAGAACCTCAACCTCTGGGGCCAGGACCTGGACGACTGCGCTGTGCTGGCCAAGgtgcgtctggctataatgatacaggcttgggaaggagtctcagcaggaacctgtgtcatgggagataggaaggcgtgggggtgggaagcggtggcggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataca
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggggt