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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTGCCAAAGAAGATGCCTAAGgtcagtttatccccaccaattcgcaactgtcctttgcgccgcacctagcctttgctcgtgaacaccgcccctgacggctgcctgccactctgtatttttgcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP03478
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465559|gb|BP093472.1|BP093472
EST:     TTGCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: TTGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|49461349|gb|BP089262.1|BP089262
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|22070656|gb|BQ819994.1|BQ819994
EST:     TGCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: TGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|49459573|gb|BP087486.1|BP087486
EST:     GCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|22075318|gb|BQ824094.1|BQ824094
EST:     AGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|49468725|gb|BP096586.1|BP096586
EST:     AGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|10790747|gb|AV628113.1|AV628113
EST:     AGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161809876|gb|FC094697.1|FC094697
EST:     GTTTGCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GTTTGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|10779988|gb|AV636668.1|AV636668
EST:     CAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: CAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|7615668|gb|AW721108.1|AW721108
EST:     AAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|10779306|gb|AV635986.1|AV635986
EST:     AGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161796317|gb|FC083400.1|FC083400
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|49460297|gb|BP088210.1|BP088210
EST:     AGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|55562639|gb|AV637706.2|AV637706
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161799052|gb|FC082415.1|FC082415
EST:     GCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACTTGCTGGGCCGCCTGGCCTTTGTG
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161814807|gb|FC100649.1|FC100649
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|49461249|gb|BP089162.1|BP089162
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161796316|gb|FC083399.1|FC083399
EST:     GAAGATGCCTAAG                         ACTGTGGTCATTGACGGGCGCGCCCTCTTGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|22052790|gb|BQ810403.1|BQ810403
EST:     AGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|16072271|gb|BI874267.1|BI874267
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|22076528|gb|BQ825304.1|BQ825304
EST:     GCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161811962|gb|FC096152.1|FC096152
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|9458820|gb|BE452542.1|BE452542
EST:     AGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|22052795|gb|BQ810404.1|BQ810404
EST:     AGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161799053|gb|FC082416.1|FC082416
EST:     GCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|49467006|gb|BP094919.1|BP094919
EST:     GAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|10785634|gb|AV642306.1|AV642306
EST:     AAAGAAGATGCCTAAG                         AGTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|7709616|gb|AW772987.1|AW772987
EST:     AGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|161800350|gb|FC082790.1|FC082790
EST:     AGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|22076529|gb|BQ825305.1|BQ825305
EST:     GTTTGCCAAAGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: GTTTGCCAAAGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|7545729|gb|AW676217.1|AW676217
EST:     AAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
EST: gi|10780061|gb|AV636741.1|AV636741
EST:     AGAAGATGCCTAAG                         ACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG
genomic: AGAAGATGCCTAAGgtcagtttat ... ttgcgcgcagACTGTGGTCATCGACGGGCGCGCCCACATGCTGGGCCGCCTGGCCTCTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTTTGCCAAAGAAGATGCCTAAGgtcagtttatccccaccaattcgcaactgtcctttgcgccgcacctagcctttgctcgtgaacaccgcccctgacggctgcctgccactctgtatttttgcgcgcag

- - - - AAAGAA
- - - -  AAGAAG
- - - - - - AAGATG