1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACTAGCTCGCTCCGTGGTGCAACTGCGGTGAAGCGCTGCGTCGCAGCGCCGGTTCGGTCCATTCGCTCAGCGGTCGTTGCGCGCGCGAGCAAGTCTCAGgtgcgtgcgcaatggaagcaatcaatatgtgtacgatgtcacggatataatgtggagctatcatcgaccgcctgccttcgcaccgagcacacaacgctct...
species | Chlamydomonas reinhardtii |
transcript | EDP03206 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGTTCGGTCCATTCGCTCAGCGGTCGTTGCGCGCGCGAGCAAGTCTCAG CTGCCCGACGCGCTGCTGTTCGATTGCGACGGCGTGCTTGTGGACACGGAGEST: gi|9460726|gb|BE453380.1|BE453380
genomic: CGGTTCGGTCCATTCGCTCAGCGGTCGTTGCGCGCGCGAGCAAGTCTCAGgtgcgtgcgc ... gacctagcagCTGCCCGACGCGCTGCTGTTCGATTGCGACGGCGTGCTTGTGGACACGGAG
EST: CGGTTCGGTCCATTCGCTCAGCGGTCGTTGCGCGCGCGAGCAAGTCTCAG CTGCCCGACGCGCTGCTGTTCGATTGCGACGGCGTGCTTGTGGACACGGAG
genomic: CGGTTCGGTCCATTCGCTCAGCGGTCGTTGCGCGCGCGAGCAAGTCTCAGgtgcgtgcgc ... gacctagcagCTGCCCGACGCGCTGCTGTTCGATTGCGACGGCGTGCTTGTGGACACGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTAGCTCGCTCCGTGGTGCAACTGCGGTGAAGCGCTGCGTCGCAGCGCCGGTTCGGTCCATTCGCTCAGCGGTCGTTGCGCGCGCGAGCAAGTCTCAGgtgcgtgcgcaatggaagcaatcaatatgtgtacgatgtcacggatataatgtggagctatcatcgaccgcctgccttcgcaccgagcacacaacgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaca