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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAGATCCCCACGCCTCTAGAAGTCCCCAAACATATTTGTAGGGTAGCTGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggtttcgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP03036
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072232|gb|BQ821570.1|BQ821570
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10786718|gb|AV643390.1|AV643390
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|9458744|gb|BE452391.1|BE452391
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10780562|gb|AV637242.1|AV637242
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10790337|gb|AV627703.1|AV627703
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|15370119|gb|BI529545.1|BI529545
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|15369580|gb|BI529006.1|BI529006
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22076740|gb|BQ825516.1|BQ825516
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|23365625|gb|BU653445.1|BU653445
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|14239428|gb|BG858244.1|BG858244
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|49463699|gb|BP091612.1|BP091612
EST:     TCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|6545148|gb|AV390932.1|AV390932
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22054891|gb|BQ811579.1|BQ811579
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10776972|gb|AV633652.1|AV633652
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|8576455|gb|BE128996.1|BE128996
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22076252|gb|BQ825028.1|BQ825028
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|49469196|gb|BP097057.1|BP097057
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|49462955|gb|BP090868.1|BP090868
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10770484|gb|AV621309.1|AV621309
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22049970|gb|BQ809002.1|BQ809002
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22068226|gb|BQ818165.1|BQ818165
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10772869|gb|AV623692.1|AV623692
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10126146|gb|BE724850.1|BE724850
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10784030|gb|AV640702.1|AV640702
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGGAGATCCCCACGCCTCTAGAAGTCCCCAAACATATTTGTAGGGTAGCTGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggtttcgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG