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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCGTTGACAGCACATGCATCAAATCGCGTGTGCAATGCTCTGGCGCTGCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggagtggggcgcagggggcggtagccggcaggcgccgtcttggtggacgcggacgttgcattgaaggaaaggggggtcggggcatgggttcggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02995
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22076909|gb|BQ825685.1|BQ825685
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|14231748|gb|BG850564.1|BG850564
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|14239511|gb|BG858327.1|BG858327
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|23364701|gb|BU652521.1|BU652521
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAA-CCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|15692949|gb|BI717254.1|BI717254
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|15703498|gb|BI727803.1|BI727803
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTTCTCCAAG                         CGCACATCCCGCTCTTTCTGT
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGT
EST: gi|6545786|gb|AV391570.1|AV391570
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|14231749|gb|BG850565.1|BG850565
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAG                         CGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
EST: gi|14239421|gb|BG858237.1|BG858237
EST:     GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTACAAG                         CGCACATTCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC
genomic: GCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggag ... cccctcgcagCGCACATCCCGCTCTTCCTGTACCCCTTCCTCCAAACCATGAGCAAAACGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTCGTTGACAGCACATGCATCAAATCGCGTGTGCAATGCTCTGGCGCTGCTGCAATGCGTGGCGTCTCACAATGAGACGAGGGCACTGTTCCTCCAAGgtgcggggagtggggcgcagggggcggtagccggcaggcgccgtcttggtggacgcggacgttgcattgaaggaaaggggggtcggggcatgggttcggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgggt