Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10786857|gb|AV643529.1|AV643529EST: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACG GTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
genomic: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACGgtgagccagc ... caacgtgcagGTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
EST:
gi|10790901|gb|AV628267.1|AV628267EST: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACG GTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
genomic: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACGgtgagccagc ... caacgtgcagGTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
EST:
gi|6550490|gb|AV396274.1|AV396274EST: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACG GTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
genomic: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACGgtgagccagc ... caacgtgcagGTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
EST:
gi|49468449|gb|BP096310.1|BP096310EST: GTCGTGTTCGAGGATGACCCCGAGACCTGCTACACG GTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
genomic: GTCGTGTTCGAGGATGACCCCGAGACCTGCTACACGgtgagccagc ... caacgtgcagGTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
EST:
gi|6551112|gb|AV396896.1|AV396896EST: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACG GTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
genomic: CCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACGgtgagccagc ... caacgtgcagGTCATGGTGTACCAGGTGCAGCATTTTGCGGACCGCGAAGACTTGAAACGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGGAGGTCGTCGGGCTGTGCCCTCCAGAACGGGACAAGCAACGTGAGGCCGTTCACCTGATCGTCGTGTTCGAGGATGACCCCGAGACCTGCTACACGgtgagccagctgagaacgcgagggagcaaatgcggtcgccagattgttgctttggtcgaggattcatgaagcgtccatgatgaactcaggactattcgagtcttaacagagacttaacaccgaggaccggtttaacgtgccctgctcgcgctgctcaacgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG