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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGAGGAAAGCCCTTGTCACTGCGTTGAGCTCCCCTACTTACGATCTTTGCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggcttataagtgtggaattgcggggaggcctgcaacgtgcgcacgcgtgctgctgcactggctttccttccaacccgacacgcgtacttgctgcgttgacgcccttttcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02072
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228932|gb|BG847764.1|BG847764
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTTCTGAAGGAGTGCAT
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGG-TCTGAAGGAGTGCAT
EST: gi|15692808|gb|BI717113.1|BI717113
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|15695185|gb|BI719490.1|BI719490
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|10792553|gb|AV629919.1|AV629919
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|10778846|gb|AV635526.1|AV635526
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|23367697|gb|BU655515.1|BU655515
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|16072685|gb|BI874681.1|BI874681
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|23363461|gb|BU651281.1|BU651281
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|15695448|gb|BI719753.1|BI719753
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|8933063|gb|BE227824.1|BE227824
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|16437590|gb|BM002810.1|BM002810
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|16431544|gb|BI996770.1|BI996770
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|22050064|gb|BQ809049.1|BQ809049
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|23365706|gb|BU653526.1|BU653526
EST:     GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
EST: gi|15697745|gb|BI722050.1|BI722050
EST:     GCGGTTTGCTTCTATTTTAAAAGCATCGCGCTAGCGGTCCATCCACCATG                         AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC
genomic: GCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggctta ... cccttttcagAACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCGAGGAAAGCCCTTGTCACTGCGTTGAGCTCCCCTACTTACGATCTTTGCGGTTTGCTTCTATTTTAGAAGCATCGCGCTAGCGGTCCAGCCACCATGgtgaggcttataagtgtggaattgcggggaggcctgcaacgtgcgcacgcgtgctgctgcactggctttccttccaacccgacacgcgtacttgctgcgttgacgcccttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC