1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCTGCACATACATCAGCAGAAATGGCGTTTGCTCTGGCCACCTCCCGCAAGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataataagttacaaccagatagagatagtttgcaagccaagatacacactcagcaagtctttggttcgcatctaaacgtttcgccgaacgcgaaatgcag
species | Chlamydomonas reinhardtii |
transcript | EDP01725 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|161797166|gb|FC087149.1|FC087149
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|49460310|gb|BP088223.1|BP088223
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCCGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|49463248|gb|BP091161.1|BP091161
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|10776611|gb|AV633291.1|AV633291
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCCGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|9441487|gb|BE441977.1|BE441977
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCCGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|49461465|gb|BP089378.1|BP089378
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCCGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|7426818|gb|AW660991.1|AW660991
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCCGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCCEST: gi|49462798|gb|BP090711.1|BP090711
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
EST: AGGCGCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAG GCCGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
genomic: AGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataa ... cgaaatgcagGCTGCTGCTCCCAAGAGCTCTGGCGTTGAGTTCTATGGCCCCAACCGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCACATACATCAGCAGAAATGGCGTTTGCTCTGGCCACCTCCCGCAAGGCTCTGCAGGTCACCTGCAAGGCGACCGGCAAGAAGACCGCTGCCAAGgcgcgtataataagttacaaccagatagagatagtttgcaagccaagatacacactcagcaagtctttggttcgcatctaaacgtttcgccgaacgcgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG