1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCACTTTGAGCTGGTCAACATGGCGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggctgcgtttcctgggatgctcgccgcttccacagcagctgctgagtctgagggtcgtttctgcgttctaacag
species | Chlamydomonas reinhardtii |
transcript | EDP01658 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|7687072|gb|AW757720.1|AW757720
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34992204|gb|CF566121.1|CF566121
genomic: CTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49470065|gb|BP097926.1|BP097926
genomic: CTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: GGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|6544623|gb|AV390407.1|AV390407
genomic: GGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34984023|gb|CF557940.1|CF557940
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: GCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|7545796|gb|AW676284.1|AW676284
genomic: GCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22071482|gb|BQ820820.1|BQ820820
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22071798|gb|BQ821136.1|BQ821136
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22073876|gb|BQ823206.1|BQ823206
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22070734|gb|BQ820072.1|BQ820072
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34991893|gb|CF565810.1|CF565810
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49469400|gb|BP097261.1|BP097261
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49467337|gb|BP095250.1|BP095250
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22076848|gb|BQ825624.1|BQ825624
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|15367729|gb|BI527155.1|BI527155
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22071874|gb|BQ821212.1|BQ821212
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49469717|gb|BP097578.1|BP097578
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|10793896|gb|AV631262.1|AV631262
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49467797|gb|BP095658.1|BP095658
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34985639|gb|CF559556.1|CF559556
genomic: CCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49466898|gb|BP094811.1|BP094811
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49469762|gb|BP097623.1|BP097623
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|15701424|gb|BI725729.1|BI725729
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|6552163|gb|AV397947.1|AV397947
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|14237243|gb|BG856059.1|BG856059
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49469778|gb|BP097639.1|BP097639
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|10793823|gb|AV631189.1|AV631189
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22050075|gb|BQ809058.1|BQ809058
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|10778592|gb|AV635272.1|AV635272
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|6552159|gb|AV397943.1|AV397943
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22076703|gb|BQ825479.1|BQ825479
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22072448|gb|BQ821786.1|BQ821786
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49461824|gb|BP089737.1|BP089737
genomic: CTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGAGAGGACTACATCGCCGCTGAAGACCAAGTATGEST: gi|22074285|gb|BQ823380.1|BQ823380
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTG-GAGGACTACATCGCCG-TGAAGACCAAGTATG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49469841|gb|BP097702.1|BP097702
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34994187|gb|CF568104.1|CF568104
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|49467223|gb|BP095136.1|BP095136
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|15367825|gb|BI527251.1|BI527251
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34994188|gb|CF568105.1|CF568105
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|14242403|gb|BG861219.1|BG861219
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|22074623|gb|BQ823546.1|BQ823546
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCGEST: gi|34988453|gb|CF562370.1|CF562370
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
EST: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAG GTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
genomic: CGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggc ... gttctaacagGTCACGGACATTTCCCTGGAGGACTACATCGCCGTGAAGACCAAGTATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACTTTGAGCTGGTCAACATGGCGTCCCCTGACGTCAAGCTCTTCGGGAAATGGTCCTTTGAGGACATCGAGgtggggcggctgcgtttcctgggatgctcgccgcttccacagcagctgctgagtctgagggtcgtttctgcgttctaacag
- - - - - - - - - - - - - - - - - - CAAGCT