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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGCGGCCGGCACGTCGCTGTCTGGGCAGGCAATTACCGACTCGGTGCTCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaaaggccacagaatgttgagggggggcctgggaagggacggagcacagggctggggcagaggtggggtgaacgcccgggaggtgggtcggga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01639
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10790905|gb|AV628271.1|AV628271
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10794122|gb|AV631488.1|AV631488
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAG
EST: gi|49470301|gb|BP098162.1|BP098162
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|49466677|gb|BP094590.1|BP094590
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|49467899|gb|BP095760.1|BP095760
EST:     CTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: CTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10786332|gb|AV643004.1|AV643004
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10784603|gb|AV641275.1|AV641275
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10787165|gb|AV643837.1|AV643837
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCAC
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCAC
EST: gi|10792763|gb|AV630129.1|AV630129
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10792349|gb|AV629715.1|AV629715
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10788843|gb|AV626563.1|AV626563
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10791128|gb|AV628494.1|AV628494
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10783559|gb|AV640231.1|AV640231
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
EST: gi|10788420|gb|AV626140.1|AV626140
EST:     TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCAC                         GGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG
genomic: TCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaa ... acacctgcagGGCGACGGTAGCGTGATCACGGTGGAGCCGGGCCTCATTGGCGGCGAGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCGCGGCCGGCACGTCGCTGTCTGGGCAGGCAATTACCGACTCGGTGCTCATTAAGCTGAGCCACACGGGCAAGAACTTCCGCAACTTTACCGTGCACgtgagtgcaaaggccacagaatgttgagggggggcctgggaagggacggagcacagggctggggcagaggtggggtgaacgcccgggaggtgggtcggga

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggt