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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTCGCTTCTCCGAGTGAAGGGTTTGGGCCTTGTCGCGAGTCTTGCGGAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatgcgtcatgaaatgcacgttgatgcgacgagcccaacgccggggacctgcaactcacccaagttctctgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01577
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769930|gb|AV620755.1|AV620755
EST:     GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATG                         GACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
genomic: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatg ... ctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
EST: gi|15697211|gb|BI721516.1|BI721516
EST:     GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATG                         GACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
genomic: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatg ... ctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
EST: gi|161793423|gb|FC077295.1|FC077295
EST:     GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATG                         GACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC
genomic: GAGCGACGCGTTGACGTCTTGCGGGGCTTTACTGCGCACTCGCGGTCATGgtaaattatg ... ctctgcgcagGACCCGCCTCCATACGAGAGCGTGCTCCAAGACCATGGGACAAACAATTTC