Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAAGAAAATGGCAGGCCGCGCGCTACTTTTGACTGGTGCACCAGGCACCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttgggggcagccgggcacttcatgggacgcgggggtgccgcctcagtcagccgacgttaagacaaggacgggcacgagtgcgggcgccagggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP00834
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161798903|gb|FC084645.1|FC084645
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: gi|161804509|gb|FC088837.1|FC088837
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: gi|161795055|gb|FC078199.1|FC078199
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: gi|8828250|gb|BE211884.1|BE211884
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTC
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTC
EST: gi|161810747|gb|FC098512.1|FC098512
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: gi|22076899|gb|BQ825675.1|BQ825675
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: gi|9441582|gb|BE442071.1|BE442071
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: gi|9458853|gb|BE452558.1|BE452558
EST:     CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG                         GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAAAGAAAATGGCAGGCCGCGCGCTACTTTTGACTGGTGCACCAGGCACCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttgggggcagccgggcacttcatgggacgcgggggtgccgcctcagtcagccgacgttaagacaaggacgggcacgagtgcgggcgccagggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa