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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTAACGTGAAGCTGTATGCGCTGCGCAACGGGACACCGCTGAACACCAAGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggagtgatagggggagaggggagagaggcgctgccaggcgttggggttgctgggacgcgccgtggcgtgccagggcttgccgctcggtcggccc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO99016
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49464689|gb|BP092602.1|BP092602
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAAACTGCTACTGGCGGGCTGTGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|161814305|gb|FC102071.1|FC102071
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|161801164|gb|FC087062.1|FC087062
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|10768996|gb|AV619821.1|AV619821
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|16434231|gb|BI999457.1|BI999457
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|10769111|gb|AV619936.1|AV619936
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|10774324|gb|AV625147.1|AV625147
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|16428904|gb|BI994130.1|BI994130
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|161818776|gb|FC104211.1|FC104211
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|22075246|gb|BQ824022.1|BQ824022
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|22072379|gb|BQ821717.1|BQ821717
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
EST: gi|23365808|gb|BU653628.1|BU653628
EST:     AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGC                         TCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC
genomic: AGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggag ... gcccttgcagTCTCCCTACCATTGCAACCTGCTACTGGCGGGCTGGGACGAGCAGGCGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTAACGTGAAGCTGTATGCGCTGCGCAACGGGACACCGCTGAACACCAAGTCGGTAGCAAACTACACGCGCGGGGAGCTGGCGACAGCGTTGAGAAGCgtgagtggagtgatagggggagaggggagagaggcgctgccaggcgttggggttgctgggacgcgccgtggcgtgccagggcttgccgctcggtcggccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggggt