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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGACAAACTTGTAGTTCTTCTAACGTAGCTCATTCAAAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagccgctttgcttgcgcgctgggtctccactcgctttgcgtcgatctgacttatttagtcgacccatgtaacaatggacttgatacggagctaggagcccgggacacggcgccgctttttgttcagccgagtgcattcttcagtcgcgccgagctaattcgctgctctgattctaatggtcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98981
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808568|gb|FC094884.1|FC094884
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|8514103|gb|BE121998.1|BE121998
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|6546929|gb|AV392713.1|AV392713
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14242417|gb|BG861233.1|BG861233
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14237056|gb|BG855872.1|BG855872
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10794296|gb|AV631662.1|AV631662
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14238089|gb|BG856905.1|BG856905
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|22053864|gb|BQ811001.1|BQ811001
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10780917|gb|AV637597.1|AV637597
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14240342|gb|BG859158.1|BG859158
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|15369196|gb|BI528622.1|BI528622
EST:     AATTGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AA-TGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|6542859|gb|AV388643.1|AV388643
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10787302|gb|AV643974.1|AV643974
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|22076196|gb|BQ824972.1|BQ824972
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14242051|gb|BG860867.1|BG860867
EST:     CAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: CAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10791112|gb|AV628478.1|AV628478
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|16431135|gb|BI996361.1|BI996361
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|22071303|gb|BQ820641.1|BQ820641
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10773522|gb|AV624345.1|AV624345
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACACCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|161795972|gb|FC085317.1|FC085317
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         ACTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|22072954|gb|BQ822308.1|BQ822308
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATTTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|6544166|gb|AV389950.1|AV389950
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10784987|gb|AV641659.1|AV641659
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|7687062|gb|AW757710.1|AW757710
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|10779996|gb|AV636676.1|AV636676
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14240161|gb|BG858977.1|BG858977
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|15367764|gb|BI527190.1|BI527190
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|6545280|gb|AV391064.1|AV391064
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|6545353|gb|AV391137.1|AV391137
EST:     AATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAATGCGGCTGCGGACATCTGCAACC
genomic: AATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|22071304|gb|BQ820642.1|BQ820642
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
EST: gi|14240115|gb|BG858931.1|BG858931
EST:     AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTG                         CCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC
genomic: AAATGTCGGACGACGGGTCTATTGAGCACCAGGAGCCCAACCTCAGCGTGgtgagcagcc ... atggtcgcagCCTGAGGTGGTCACCAAGTACAAGGCGGCTGCGGACATCTGCAACC