1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCTCATTTACACGCTCTGCTCGCGCAGCAAGATGGATCGCGAGAAGCTCAGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggctggaggcgcgctcggtgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaatgtgcag
species | Chlamydomonas reinhardtii |
transcript | EDO98665 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10772407|gb|AV623230.1|AV623230
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10783596|gb|AV640268.1|AV640268
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10776733|gb|AV633413.1|AV633413
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10777068|gb|AV633748.1|AV633748
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|6545895|gb|AV391679.1|AV391679
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10772163|gb|AV622986.1|AV622986
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10778678|gb|AV635358.1|AV635358
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|34984847|gb|CF558764.1|CF558764
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|6547417|gb|AV393201.1|AV393201
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|6545428|gb|AV391212.1|AV391212
genomic: AGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10125857|gb|BE724561.1|BE724561
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10772132|gb|AV622955.1|AV622955
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|16431118|gb|BI996344.1|BI996344
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|7686988|gb|AW757636.1|AW757636
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|49462107|gb|BP090020.1|BP090020
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10782372|gb|AV639052.1|AV639052
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTGGCAEST: gi|49462032|gb|BP089945.1|BP089945
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|34987287|gb|CF561204.1|CF561204
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|15370641|gb|BI530067.1|BI530067
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|23365482|gb|BU653302.1|BU653302
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|22055775|gb|BQ812025.1|BQ812025
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|14229377|gb|BG848193.1|BG848193
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGAACCACCTCCACTGACGACAAGCGGTTGCEST: gi|10780185|gb|AV636865.1|AV636865
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAG-ACCACCTCCACTGACGACAAGCGGTTGC
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|15695686|gb|BI719991.1|BI719991
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10773890|gb|AV624713.1|AV624713
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|34984848|gb|CF558765.1|CF558765
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10780580|gb|AV637260.1|AV637260
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|10769647|gb|AV620472.1|AV620472
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAEST: gi|49464431|gb|BP092344.1|BP092344
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG GAAGAAGAATGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTCATTTACACGCTCTGCTCGCGCAGCAAGATGGATCGCGAGAAGCTCAGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggctggaggcgcgctcggtgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG