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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAAGAAACCATGCAGGTCGCGGCTGGCTCGGACGGCATTCAGAAGCTGCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGGgtgggaacgagttcccccatagtcgtctgcatccttgattgtgcggtggacgctgacctcgtggtgctttgcctgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98563
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49470999|gb|BP098860.1|BP098860
EST:     GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGG                         CTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTG
genomic: GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGGgtgggaacga ... gcctgtgcagCTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTG
EST: gi|161820768|gb|FC106203.1|FC106203
EST:     GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGG                         CTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAGGAGATTG
genomic: GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGGgtgggaacga ... gcctgtgcagCTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTG
EST: gi|7616044|gb|AW721484.1|AW721484
EST:     GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGG                         CTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTTAGGCCGAGAAAGAGATTG
genomic: GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGGgtgggaacga ... gcctgtgcagCTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTG
EST: gi|239841300|gb|GR283157.1|GR283157
EST:     GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGG                         CTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTG
genomic: GCTTGCAGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCAAGGgtgggaacga ... gcctgtgcagCTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTG