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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGCTGCCCGTTTTGCCGACCATGTTTGCCCTTCGCGCTCCTGTGGCCCGGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAGgtgcgcagtgatcgcatacacggcgctctggtttggcgcggcgccaaccggaggattgctccttgcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98131
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8287137|gb|BE024696.1|BE024696
EST:     GGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAG                         CGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTGAGGCTGCTACCAAC
genomic: GGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAGgtgcgcagtg ... ttgcttgcagCGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTGAGGCTGCTACCAAC
EST: gi|49458736|gb|BP086649.1|BP086649
EST:     GGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAG                         CGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTGAGGCTGCTACCAAC
genomic: GGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAGgtgcgcagtg ... ttgcttgcagCGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTGAGGCTGCTACCAAC
EST: gi|10777462|gb|AV634142.1|AV634142
EST:     GGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAG                         CGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTGAGGCTGCTACCAAC
genomic: GGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCAGgtgcgcagtg ... ttgcttgcagCGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTGAGGCTGCTACCAAC