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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATCTGCACCATTTCACAAAAATCGTTTGCAGTTCGCACTGCCACCAGAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcgccgtggtgcagcagcagctgcagattgtcgcgttcgcgtaaggccgaactgggaaggctggccgaaaattcggctggagtgtgtttgcac...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97600
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161791694|gb|FC078615.1|FC078615
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCCAAGATGGCAGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|49464487|gb|BP092400.1|BP092400
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|49460621|gb|BP088534.1|BP088534
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|22061674|gb|BQ814385.1|BQ814385
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|15373566|gb|BI532992.1|BI532992
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|161791279|gb|FC081178.1|FC081178
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCCAAGATGGCAGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|16073596|gb|BI875592.1|BI875592
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|10779355|gb|AV636035.1|AV636035
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|15368299|gb|BI527725.1|BI527725
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|161792152|gb|FC077220.1|FC077220
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCCAAGATGGCAGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|15695486|gb|BI719791.1|BI719791
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
EST: gi|15372826|gb|BI532252.1|BI532252
EST:     GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAG                         TACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT
genomic: GAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcg ... cctcacgcagTACTCTTTCTCGCTGACTACATTCAGCCCCAGCGGCAAGCTGGTGCAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGATCTGCACCATTTCACAAAAATCGTTTGCAGTTCGCACTGCCACCAGAAGAATCCAGTACATTTAAGCTTGTGGAGCTAAGATGGCGGAGTCGCAGgtaggcatcgccgtggtgcagcagcagctgcagattgtcgcgttcgcgtaaggccgaactgggaaggctggccgaaaattcggctggagtgtgtttgcac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt