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GGACTGGAACGACGCAGCGTTCCATGAGGCCGCAACAGGAGGCCCTTTCGAGGATGCCGTCGGACAGTCGGACGCGCGCACCGTGGACTCTGTCGAGCAGgtagggcctcgcttgaattaacatacgggtcgcggcgcgggttgcggctgcacttacgtagtggtggcaagcatggtgggtcgacgtagtagtgtggctt...
species | Chlamydomonas reinhardtii |
transcript | EDO97391 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGATGCCGTCGGACAGTCGGACGCGCGTACCGTGGACTCTGTCGAGCAG GTGCTGGCTGCCCACGGCGGCGTCAGGATCAGCCGCGGCCTTTTCAAGTTTEST: gi|6544509|gb|AV390293.1|AV390293
genomic: AGGATGCCGTCGGACAGTCGGACGCGCGCACCGTGGACTCTGTCGAGCAGgtagggcctc ... tactgcacagGTGCTGGCTGCCCACGGCGGCGTCAGGATCAGCCGCGGCCTTTTCAAGTTT
EST: AGGATGCCGTCGGACAGTCGGACGCGCGTACCGTGGACTCTGTCGAGCAG GTGCTGGCTGCCCACGGCGGCGTCAGGATCAGCCGCGGCCTTTTCAAGTTTEST: gi|49463451|gb|BP091364.1|BP091364
genomic: AGGATGCCGTCGGACAGTCGGACGCGCGCACCGTGGACTCTGTCGAGCAGgtagggcctc ... tactgcacagGTGCTGGCTGCCCACGGCGGCGTCAGGATCAGCCGCGGCCTTTTCAAGTTT
EST: AGGATGCCGTCGGACAGTCGGACGCGCGTACCGTGGACTCTGTCGAGCAG GTGCTGGCTGCCCACGGCGGTGTCAGGATCAGCCGCGGCCTTTTCAAGTTT
genomic: AGGATGCCGTCGGACAGTCGGACGCGCGCACCGTGGACTCTGTCGAGCAGgtagggcctc ... tactgcacagGTGCTGGCTGCCCACGGCGGCGTCAGGATCAGCCGCGGCCTTTTCAAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGGAACGACGCAGCGTTCCATGAGGCCGCAACAGGAGGCCCTTTCGAGGATGCCGTCGGACAGTCGGACGCGCGCACCGTGGACTCTGTCGAGCAGgtagggcctcgcttgaattaacatacgggtcgcggcgcgggttgcggctgcacttacgtagtggtggcaagcatggtgggtcgacgtagtagtgtggctt
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggct