1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGATCGGGACCGTGGGGGGCCCTCCACAGTGCTTGTCGACACCCGCAACCCCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAGgtgacagcgactggatgcatacccatgcctggcatagctttcagggtttgcacgtgggtgacgctatgccaataggggctggcaaggccctccgctctgg...
species | Chlamydomonas reinhardtii |
transcript | EDO96621 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAG GTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCGEST: gi|15696202|gb|BI720507.1|BI720507
genomic: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAGgtgacagcga ... aatcccacagGTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCG
EST: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAG GTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCGEST: gi|15705077|gb|BI729382.1|BI729382
genomic: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAGgtgacagcga ... aatcccacagGTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCG
EST: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAG GTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCGEST: gi|16432292|gb|BI997518.1|BI997518
genomic: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAGgtgacagcga ... aatcccacagGTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCG
EST: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAG GTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCG
genomic: CCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAGgtgacagcga ... aatcccacagGTCAACGCAGTTGCATGGAACTGCGATGGACGGAGGCTGGCCAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCGGGACCGTGGGGGGCCCTCCACAGTGCTTGTCGACACCCGCAACCCCGGGTTTGAAGGCTACGGGTTGAGAGACCTGAACGGCCACCGCAAGAAGgtgacagcgactggatgcatacccatgcctggcatagctttcagggtttgcacgtgggtgacgctatgccaataggggctggcaaggccctccgctctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtga