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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATACACGCGAGCGACCATCTCGGACTGTATCGTCTGATTTTTTCTCTAACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgtatcgcgcttgccgatactgcgactcttactgttccgagcgacttccggtgtcgcatggcatgcaagggagttgcactcggccgtgcttggacgctgacacgcgctcgcccttacttgactgtcgttttgtacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96606
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15703523|gb|BI727828.1|BI727828
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|22071732|gb|BQ821070.1|BQ821070
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|15696879|gb|BI721184.1|BI721184
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|15693063|gb|BI717368.1|BI717368
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|9210419|gb|BE337334.1|BE337334
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|23362385|gb|BU650205.1|BU650205
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|16432198|gb|BI997424.1|BI997424
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|10776392|gb|AV633072.1|AV633072
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|10126522|gb|BE725226.1|BE725226
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|15694256|gb|BI718561.1|BI718561
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|10128238|gb|BE726942.1|BE726942
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|14231278|gb|BG850094.1|BG850094
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|16428820|gb|BI994046.1|BI994046
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|15696115|gb|BI720420.1|BI720420
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG
EST: gi|14231284|gb|BG850100.1|BG850100
EST:     ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGA                         ACCGCCCCGGAAGCATGACGAAGCCTGCAAG
genomic: ACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgt ... ttttgtacagACCGCCCCGGAAGCATGACGAAGCCTGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATACACGCGAGCGACCATCTCGGACTGTATCGTCTGATTTTTTCTCTAACTCTCCGCCAAAATGCTGTCATGGAAGGACGAGGAGGAGCTGTCCCGGAgtaagtgtgtatcgcgcttgccgatactgcgactcttactgttccgagcgacttccggtgtcgcatggcatgcaagggagttgcactcggccgtgcttggacgctgacacgcgctcgcccttacttgactgtcgttttgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT