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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCCCCGCTGTCGCTGCTGCCACTGCCCCAATGGCTACCGTATCCTTCCCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgttttgcagcgttacaagccaattttgcgactggctgcatactaaagtgccctcaatgtcctgcactctacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96603
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768104|gb|AV618929.1|AV618929
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
EST: gi|49461894|gb|BP089807.1|BP089807
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
EST: gi|49459603|gb|BP087516.1|BP087516
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
EST: gi|23364904|gb|BU652724.1|BU652724
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
EST: gi|49460762|gb|BP088675.1|BP088675
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
EST: gi|49463250|gb|BP091163.1|BP091163
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
EST: gi|49469740|gb|BP097601.1|BP097601
EST:     CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGT                         TCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA
genomic: CCGGCTGAGTATGGGCTGGTCGCTGGCGCCGTCGCGGTCTCCTGGTTCGTgtaagttcgt ... cactctacagTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAAGAA