1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGgtgcatttggctggggaagcgtttggacgatggagcgttcgaactggttatgacctatagcgtgtggacggcaagctgatgcgtacgggttagtggaacacgctgactgagacggtcgctctgacgcccctcgtcgttgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDO96585 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAG ATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCGEST: gi|15696824|gb|BI721129.1|BI721129
genomic: CGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGgtgcatttgg ... cgttgcgcagATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCG
EST: TCGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAG ATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCGEST: gi|10784305|gb|AV640977.1|AV640977
genomic: TCGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGgtgcatttgg ... cgttgcgcagATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCG
EST: CGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAG ATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCGEST: gi|15696826|gb|BI721131.1|BI721131
genomic: CGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGgtgcatttgg ... cgttgcgcagATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCG
EST: TCGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAG ATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCG
genomic: TCGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGgtgcatttgg ... cgttgcgcagATGCGTGGCCCCCGCGCGTTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGgtgcatttggctggggaagcgtttggacgatggagcgttcgaactggttatgacctatagcgtgtggacggcaagctgatgcgtacgggttagtggaacacgctgactgagacggtcgctctgacgcccctcgtcgttgcgcag
- - - - AGAAGC