1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTATTCTGCATCGCGTGGGCTTTGCCATGCGGGAGAGCGGCCAGGCGCTGGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatcgcatgattttcatctgctgtagccttgtattgcgatgccaagcagaggcactgaagcgtgggtccattttccgcag
species | Chlamydomonas reinhardtii |
transcript | EDO96533 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGEST: gi|14228062|gb|BG846878.1|BG846878
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGEST: gi|6544765|gb|AV390549.1|AV390549
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGEST: gi|161809985|gb|FC097653.1|FC097653
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGEST: gi|10782107|gb|AV638787.1|AV638787
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGEST: gi|7615387|gb|AW720832.1|AW720832
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGGEST: gi|161819179|gb|FC109866.1|FC109866
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
EST: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGC TGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
genomic: GGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatc ... ttttccgcagTGAACCGGCACGCCACGGTCCTGCCCATGCGCCACAACGTGCCTAGCCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTATTCTGCATCGCGTGGGCTTTGCCATGCGGGAGAGCGGCCAGGCGCTGGAGCGCGTGGGCTGCAGGCTGCAGGGCGTTTACTCGTTTGAGGAGAAGCgtgagctatcgcatgattttcatctgctgtagccttgtattgcgatgccaagcagaggcactgaagcgtgggtccattttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC