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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTCAGGAAAGAAAATCTGTTATGTTCAGTTCCCTCAAAGGTTCGATGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTGTTCTTTGATgtaagtacagccaccactttcctattgtatccctttttcttgagatttctgtagaataccaactaatgaatctttatttacag

Basic information

species Arabidopsis thaliana
transcript AT5G64740.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64740.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
TCAGTCAGGAAAGAAAATCTGTTATGTTCAGTTCCCTCAAAGGTTCGATGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTGTTCTTTGATgtaagtacagccaccactttcctattgtatccctttttcttgagatttctgtagaataccaactaatgaatctttatttacag---
    |  || |||| | | || ||||| ||||| || ||||| || |||||||| ||| | || ||| ||||||||||||| ||| | || |||||||||||| ||| | |     |||| || || | ||||||| |  |    ||  | ||  ||    |    ||| | || | ||  |    
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtatacctttttcttttcttttttttccctttattgt----ttcttatatcattgggaaagctgatttttcaattgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124914824|gb|EH988698.1|EH988698
EST:     GGATTGATAGGCACGANCGATACTCAAATCGCAATGTTGTGTTCTTTGAT                         ATCAATATGAAAGGTTTGGATGGGCTACAAGGGCCTATA
genomic: GGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTGTTCTTTGATgtaagtacag ... ttatttacagATCAATATGAAAGGTTTGGATGGGCTACAAGGGCCTATA