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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCAAAAGATGAGTTTACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAGgcaaatcttctttctctcttggtttagagggcatgttaaaagaatttttcttttcaagtatatcaaccaattttgtttatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G63640.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63640.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM5G834205_T01 (Zea mays), 5'ss of exon 7
GGGGCAAAAGATGAGTTTACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAGgca--aatc---ttctttctctcttggtttagagggcatgttaaaagaatttttcttttcaagta------tatcaaccaattttgttta-tgcag--------------------------------------
|| ||||  ||||| |||    | |||||||||||||||||| ||||||||||  | ||  |||||||||| || |||||||| ||| |    ||   || | |  || ||| ||| || ||  ||||  || |  | | |   || |  |      | | |        ||| |  | |||                                      
GGAGCAACGGATGAATTTGTGTTGGATCTTGTCGAGCAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtccggttttattactgttgctttggatgg--tgttggaatatctgtgcacatctatcacctttttgttacttgtcgctgtctgctacagtcacactgatgttttgtgccgcccctattatttgctag

upper sequence: AT5G63640.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G135568_T01 (Zea mays), 5'ss of exon 7
GGGGCAAAAGATGAGTTTACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAGgcaaatcttctttctc-tcttggtttagagggcatgttaaaagaatttttcttttcaagtatatcaaccaattttgtttat-gcag------------------------------------------------
|| ||||  ||||| |||    | |||||||||||||||||| ||||||||||  | ||  | |||||||| || |||||||| ||| |    | |  | || |    |||     |||||| |    |||| | | |   ||  |||  |  |   | ||  || | || |                                                
GGAGCAACGGATGAATTTGTGTTGGATCTTGTCGAGCAATGTACGTTTCAGAAGCAACGGATGATGCACCTTGTTATGACATCAAGgtacggatccggtttcatgactgttgctttggcatggtgttggaatatctgtgcacatctatcgccgcgtttgttacttgtcgctgtatgctacagccacactgatgttttgtgtcgccactaatatctgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116410607|gb|EG453199.1|EG453199
EST:     CAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAG                         GGATGAAAAAGCAGTTTCTAAAGCAATCGAATTGAATGAGCAACTTCAGAG
genomic: CAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAGgcaaatcttc ... gtttatgcagGGATGAAAAAGCAGTTTCTAAAGCAATCGAATTGAATGAGCAACTTCAGAG
EST: gi|124842242|gb|EH926679.1|EH926679
EST:     CAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAG                         GGATGAAAAAGCAGT
genomic: CAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAGgcaaatcttc ... gtttatgcagGGATGAAAAAGCAGT