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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGCACAATGCAGAGTGTGGAGAGAACATTTCAAATCACAAGGGCAGACAAGGACCTTTTGGCCAAACCAGAGTACGATGTTCAGgttgggttttgtaaactacatttaatatgtcaaggtgtatctacctatacgtttctaactggaaatcaattttgtttag

Basic information

species Arabidopsis thaliana
transcript AT5G60410.5
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60410.5 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 9
TGCAAGCACAATGCAGAGTGTGGAGAGAACATTTCAAATCACAAGGGCAGACAAGGACCTTTTGGCCAAACCAGAGTACGATGTTCAGgttgggttttgtaaactacatttaatatgtcaaggtgtatctacctatacgtt-----tctaactgg--aaatcaattttgtttag
    | | || |||||||||||||||||||||||||| | || || || ||||||||| |  |  | |||||||| |  |||||| ||||| | ||   |   |      |  ||| | || |  |||    |||| | ||      || |||     ||  |||    | |||
AAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTGACTAGAGCTGACAAGGACTTGGTATCAAAACCAGAATTTGATGTTGAGgtttgtttggattttcagtgcatg-tatattaatgcatattcttctatgcattggtttgcttacttattgaacaaatgacttgtag

upper sequence: AT5G60410.5 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA11G15880.1 (Glycine max), 5'ss of exon 9
TGCAAGCACAATGCAGAGTGTGGAGAGAACATTTCAAATCACAAGGGCAGACAAGGACCTTTTGGCCAAACCAGAGTACGATGTTCAGgttgggttttgtaaactacatttaatatgtcaaggtgtatctacctatacgtt-----tctaactggaaatcaattttgtttag
    | | || |||||||||||||||||||||||||| | || || || |||| |||| |  |  | |||||||| |  |||||| ||||||| ||   |   ||     |  |||   || |  ||||   |||| | ||     ||| |||  |||  |||    | |||
AAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTGACTAGAGCTGACATGGACTTAGTATCAAAACCAGAATTTGATGTTGAGgttggtttggattttctgtgcatg-tataataatgcatatccttctatgcattggttttcttactaaaaa--aatgacttgtag