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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAAAGGGGGACGTTTCCGTGCAAACTTGTCGGGGAAGCGTGTCGAGTTCACTGGTAGAACTGTAATTTCACCTGATCCCAATCTGAAAATTACAGAGgtaacttaccttaagtggtggttaattgttgctttttgttatttatatttttggtgtaacttatcacaaaggtaactaaacttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G60040.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 8
AGGAAAAGGGGGACGTTTCCGTGCAAACTTGTCGGGGAAGCGTGTCGAGTTCACTGGTAGAACTGTAATTTCACCTGATCCCAATCTGAAAATTACAGAGgtaacttaccttaagtggtggttaattgttgctttttgttatttatatttttggtgtaacttatcacaaaggtaactaaacttttcag------
||| ||   ||| ||||| ||||  |||||||| ||||||||||| ||||  ||||| || ||||| || || ||||| || ||||| |||||||| ||||| |  | | |||      | || |||| |  |||  | |  || | || |   ||    ||||    ||   || |  |  | |         
AGGGAAGCAGGGGCGTTTTCGTGGGAACTTGTCTGGGAAGCGTGTTGAGTATACTGGCAGGACTGTTATATCGCCTGACCCTAATCTAAAAATTACCGAGgtcagatgctttactaaaagcttcattgat-ttttgggctgctt-tgttgtgcctgctgtttatttggaaatcaaatggatctattgtctctag

upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S26_192V6.1 (Physcomitrella patens), 5'ss of exon 8
AGGAAAAGGGGGACGTTTCCGTGCAAACTTGTCGGGGAAGCGTGTCGAGTTCACTGGTAGAACTGTAATTTCACCTGATCCCAATCTGAAAATTACAGAGgt-aacttacctta--agtggtggtt--aattgttg----ctttttg-------------ttatttatatttttggtgt--aacttatcac-aaaggtaactaaacttttcag------------------
 ||||||  ||| || ||||||| |||  | || || ||  | || || ||||||||  ||||||| |||||||| ||||| ||||||||||| || ||||| | || || |    | || |  ||  | || |      | ||||              ||| ||  | ||||  ||   || || |  | ||| || | |||   ||                      
GGGAAAACAGGGTCGGTTCCGTGGAAATCTCTCTGGTAAAAGGGTTGACTTCACTGGCCGAACTGTTATTTCACCAGATCCAAATCTGAAAATCACGGAGgttagctgacatcgccattgttcatttcagttatcagcgccattttaatcgtgtgtgactttacttgaacttttaatgctgaatttgtgtcgaaaagtgagtaattcttgtctttgtatgttctgaaacag