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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagatactaagaaacaaatcacatgatgcaaaaagcgtagcttaaggtaataagaagaataatctaaacgttttatattctttag

Basic information

species Arabidopsis thaliana
transcript AT5G56500.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G083716_T05 (Zea mays), 5'ss of exon 7
----------------------GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagata----ctaagaaacaaatcacatgatgcaaaaagcgt----------agcttaaggtaataagaa----gaataatc-taa---acgttttatattctttag---
                      || || |||||||| ||||||||||||||||| |||||||| || || ||  |  | |||||||||||||| |||||||| |  |     | | |   |  |     | ||      |  ||             | || ||   | | |    | |||| | |||   | || |    ||  ||     
TTTTTATGAACCTAATTTGCAGGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAGgtaatgtgaagtccacgggtcgcaatgtgttatttgttcaatgttcttttcatcgattcaatgttgcaggtatggtggataaccataattcatgtatggcgttgcttgacag

upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 8
GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagata----ctaagaaacaaatcacatgatgcaaaaagcgt----------agcttaaggt----aataagaagaataatc-taa---acgttttatattctttag---
|| || |||||||| ||||||||||||||||| |||||||| || || ||  |  | |||||||||||||| |||||||| |  |     | | |   |  |     | ||      |  ||             | || ||      || |  | |||| | |||   | || |    ||  ||     
GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAGgtaatgtgaagtccacgggtcgcaatgtgttatttgttcaatgttcttttcatcgattcaatgttgcaggtatggtggataaccataattcatgtatggcgttgcttgacag

upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G095252_T02 (Zea mays), 5'ss of exon 3
GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagatactaagaaacaaatcaca----tgatgcaaaaagcgtagc-ttaaggtaataagaagaataatctaa--acgttttatattctttag-----------------------
|| || |||||||| ||||||||||||||||| |||||||| || || ||  |  | || ||||||||||| ||||||||    |   |  | ||| ||||||    |  ||  |   |     | ||      ||     ||||  | |||  | | |  |||    | ||                       
GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCAAAGCTTGCTGGTGGTGTTGCTGTCATTCAGgtattgtga-agtacacagatcacaatttttgtgttatttgttcgacgttctttccattgattgaatgttgtaaggatggtggataactgtaagtcatatctggtgttgcctgacag

upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 8
GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagatactaagaaacaaatcacatgatgcaaaaagcgtagcttaaggtaataagaagaataatctaaacgttttatattctttag---
|||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||| | | ||| |   |  |||   |  |||  |   |  | |  || |    |  | | |  ||  |   |  ||| | | | |  |   
GCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTATCTGGTGGTGTGGCTGTCATACAGgtaacagactcactga--aatggtaatatgtta---gtttgg--tacgccgttgggtatatcaacttgggcaatttttgtacatgtgtag

upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G18760.1 (Glycine max), 5'ss of exon 8
GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagatactaagaaacaaatcacatgatgcaaaaagcgtagcttaaggtaataagaagaataatctaaacgttttatattctttag
|||||||| ||||| ||||| || |||||||| |||||||||||||||||||| || || ||||| ||||| || ||||| | | ||| |   | |  |   |  ||   |     |||   |         |  |   |     ||   || || ||  | |||
GCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTGTCTGGTGGTGTGGCTGTGATACAGgtaacagactcactgaaatgtggtaatatattagtttggtactctgcaaggtatatcaacttggggcaatttttgtacata-tatag

upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 9
GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtgagatactaagaaa-caaatcacatgatgcaaaaagcgtagcttaaggtaataagaagaataatctaaacgttttatattctttag---
|| || || ||||| ||||| |||||||| |||||||| |||||||| ||||| ||||| ||||||||||| |||||||| |  |  ||   |  | | | | |   |  |||     |       |    |    || ||    |||   ||   |   |||| |   
GCAGCAGAGCAAGAATATGAGAAGGAAAAACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattcttagttagtccagttaaaatttataaatgatttcatcattgcaggtgcttagtatctattaattattcattgaacttttgaag

upper sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S15_485V6.2 (Physcomitrella patens), 5'ss of exon 6
----------------------GCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGgtga-gatactaagaaacaaatcacatgatgcaaaaagcgtagcttaaggtaataagaagaataatctaaacgttttatattc--tttag------------------------------------------------
                         || || ||||| ||||||||||| ||| | ||||||||||||||||| || || || ||||| ||  | ||||||||    | | |   |||    |  | |       |     ||| ||   |  ||  ||| | | |||     | || ||   |  ||| |                                                
CCAAATCCGCAACCTCATCGAAATCGCCGAGCAAGAATATGAAAAGGAGAAGTTGAATGAGAGAATTGCTAAGTTGTCTGGAGGTGTGGCCATCATTCAGgtactaacaatgtcaaagttgtagcttatgcttgattttctagttttttgagatttgaacactcatcattgtgcttaatgcccggttttgctgtttagtcctgggagggctccacttgacttgagacttcctgtgcag