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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAGgcatgtccctttttgtttttgcttataagaatcaattatcttggtaagttgaactaatattattgttgtcttgttttacag

Basic information

species Arabidopsis thaliana
transcript AT5G56160.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G014994_T03 (Zea mays), 5'ss of exon 8
TCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAGgcatgtccctttttg-----tttttgct-tataagaatcaattatctt----ggta----agttgaactaatattattgttgtcttgttttacag----------------------------------
 ||| | || || | ||| || || | ||||| |||| ||||| | ||||||||| |||||||||||||||| ||||||| |||||||  |||| |  ||| | ||   |  |||     || || || |||   | || ||||||||    ||||    |||  |  |||| |  ||||||  |    || | |                                  
CCAATTGCCGGATTACTTTGGTGGTTCATGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGTCCCTGGAGTGATCCTTCAATAATGAAGgtaagtttgtaattgatgtcttcttactgtatcgtagtctattatctttcatggtacatcagtatatttaatttatttgttggttgtcattgctgttgcttctggtgatgaccttattttttattgtag

upper sequence: AT5G56160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G452580_T03 (Zea mays), 5'ss of exon 9
TCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAGgcatgtccctttttgtt-tttgcttataagaatcaattatcttggtaagttgaactaatattattgttgtcttgttttacag-----------------------------------------------
 ||| | ||||| | ||| || || |  |||| |||| ||||| | ||||||||| |||||||||||||||| |||||||  ||||||  |||  |  | | |  |   |   || |   | ||||    ||   | | |  || |    ||    |  | |||  ||  ||| | |    |                                               
CCAATTACCAGAGTACTTTGGTGGTTCGTGCACATGTTCTAACCATGGAGGGTGCCTGAGGTCTAACAAAGGCCCCTGGAGCGATCCTTCAATCATGAAAgtaaatttatgactgataccttcttactgtaacatagtttactgtttttatggtacatcaatatgtttaacttatctgttggttgtcattgctgttgctgctggtgatgaccttatttttctactgtag

upper sequence: AT5G56160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 9
TCAACTTCCAGAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAAGGACCCTGGAATGATCCTGAAATAGTTGAGgcatgt-ccctttttgtt---------tttgcttataagaatcaattatcttggtaagttgaactaatattattgttgtcttgt-tttacag----------------------------------------------------------------
|||||| || || |||||||| ||||  |||| |||| |||  || || |||||| |||||||||| ||||| || |||||||||||||||||| |  ||| | |   ||||| ||||         ||||||| ||  |   | | ||     |   ||| |  || ||| | |  | ||||  | |  ||                                                                
TCAACTGCCTGACTTCTTGGGTGGCTCTTGCACATGTGCTACTGATGGTGGGTGCCTGAGGTCTAATAAAGGTCCATGGAATGATCCTGAAATAATGAAGgtaggagtcctttgtgttggagtggcttttgcttgtagtatgtattgattccattcctttgcaagaa-attttggcagccttgaatctttaggttgagctggtttatctggagattggccaaattgattctcatttaagttttttctaatttgtag