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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag

Basic information

species Arabidopsis thaliana
transcript AT5G54260.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 9
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag
 ||| ||||||| ||||  ||||| | |||||| ||  | |||||||| || ||||| || || ||||||||||||||||||||||| || || ||||||||     |  | || ||||||    | | |    |||||| || |  | |  |  |||  ||||| |  | ||| | |     |||             
AAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGgt----aatgacttggattttatttgatttcttttttaaaaaataacgtg--aatatgc-acttgtca-tatgatcaattgtttatag-----------

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os08g08030.1 (Oryza sativa), 5'ss of exon 8
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgca---tttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag
 ||   || | | | |||||  || | ||| ||  |  | ||| |||| || |||||  |  | |||||||||||||||||||||||||| || | ||||||        ||    |  ||| ||| || ||||   ||   |  |  ||  | || | ||||| ||   | ||| | |||        ||||||||  |  
AAAGGGAAGCTCAACAAATGGCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCACCAGgt--------aac---acattttgagctactgcaaatttcttactaatgtttgtca-agtgttatttttatttttaatctag------ctaaactttgcag-

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G106056_T01 (Zea mays), 5'ss of exon 10
---GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag
    ||  ||||||| |||| ||| || | |||||| ||  | ||||||||||| || || ||||| |||||||||||||||||||| || || || || |||||     || |  ||||| |||    || |||   ||||  |  |                                                      
GATAAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTAccacgtttcctggattttattgtatggggccatgagcatgaatgtcttattgatcctcaggt-----aacagcttgatatttcctttt-ttgttattaaggactaa-----------------------------------------------------

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcat-ttaaataagagtga-gccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag-------------------
 ||  ||||||| |||| ||| || | |||||| ||  | ||||||||||| || || ||||| |||||||||||||||||||| || || || || |||||    |    || |    |||   ||||||      |||||     ||  |      ||| |  ||  | |  |    ||||    | |  | ||   |                    
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag
 |||  ||| || |||||||| |||| |||||||||  | ||| | ||||| ||||||||||||||||||||||||||||||||  |  | ||||| |||||     ||     | ||  |||   | | ||   | | ||     |||   |   |||    |||     | |  |  |   | ||||  || |  ||
TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtgtgctaa-----ttatacttgtcttaaatgggctcagat-----tgacatatgttgtgttctgcaaaagtaatatgta---ttttaattttctccag

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtc-catgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag-
 ||  |||| || ||||||||||| |||||||| ||| | ||| | ||||| |||||||| |||||||| ||||| |||||||| ||  | || || |||||  ||  ||| ||||  ||      ||| ||   | ||| | |   ||| |   | | || ||    | | | |  |  | |   ||   ||||  |   
AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggcaccaaatatttattt------gtttttttctataactca---tga-ctttacttttgctacagtatctca-ttggaggtcgttttgctttgaacag