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TCACATATGGCGAACAGGTTTTGAGTGTGATGAACTGAAAGCTATTGTTTTTGAGGATGTAGCAGATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAGgtatgttcatgtagcttttaaagaaatgacatttttttcacaggtctaatggttttcatgcgaatag
species | Arabidopsis thaliana |
transcript | AT5G53850.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAAATGGCATTCTTCAGGAATTAAG GTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGGEST: gi|164100447|gb|ES211374.1|ES211374
genomic: AGAAATGGCATTCTTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
EST: GATGCTTTAGNGAAATGGCATTCTTCAGGAATTAAG GTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAA-GCTTCTCTTTGGGEST: gi|164009508|gb|ES198624.1|ES198624
genomic: GATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
EST: GCTTTAGAGAAATGGCATTCTTCAGGAATTAAG GTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGGEST: gi|164171280|gb|ES148604.1|ES148604
genomic: GCTTTAGAGAAATGGCATTCTTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
EST: TTCAGGAATTAAG GTTTACATATATTCTAG-GGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGGEST: gi|124720224|gb|EH811626.1|EH811626
genomic: TTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
EST: CTTCAGGAATTAAG GTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGGEST: gi|86088072|gb|DR383831.1|DR383831
genomic: CTTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
EST: TCGAGGATGTAGCAGATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAG GTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGGEST: gi|164176435|gb|ES054609.1|ES054609
genomic: TTGAGGATGTAGCAGATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
EST: GATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAG GTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
genomic: GATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAGgtatgttcat ... atgcgaatagGTTTACATATATTCTAGCGGTAGTCGATTAGCGCAAAAGCTTCTCTTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACATATGGCGAACAGGTTTTGAGTGTGATGAACTGAAAGCTATTGTTTTTGAGGATGTAGCAGATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAGgtatgttcatgtagcttttaaagaaatgacatttttttcacaggtctaatggttttcatgcgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG