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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATTGAAAGCTGCTGGAGTGATGCACACTGTTGCATTGCGAACAGAAGCAACCATTACTAGCGGTGAAATGCCACCTAATCTTGGTCAAGCCTTCAAGgtaagccacgcctgatttccttgtcttgaaactctgcaccattgagtctatttgttatctaatccaaaataacaagaacatttttttgctactacag

Basic information

species Arabidopsis thaliana
transcript AT5G52920.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S318_21V6.1 (Physcomitrella patens), 5'ss of exon 8
CCCATTGAAAGCTGCTGGAGTGATGCACACTGTTGCATTGCGAACAGAAGCAACCATTACTAGCGGTGAAATGCCACCTAATCTTGGTCAAGCCTTCAAGgtaagccacgcctgatttccttgtcttgaaactctgcaccattgagtctatttgttatctaatccaaaataacaag--aacatttttttgctactacag------
 || ||||||||||   |||||||||||||||| ||  |||| ||||||||||||||  |    |  ||    ||  |||| ||||||| |||||| ||||||| |  |        | |  |  ||| ||    |||  | |    || | ||  |  |      |   |||  |  |   | |||| | ||| ||||      
TCCTTTGAAAGCTGTGCGAGTGATGCACACTGTGGCCATGCGCACAGAAGCAACCATGCCAGAGGAGGAGGCCCCTGCTAACCTTGGTCGAGCCTTTAAGgtaa-ctgctttcatccttcaagcattgtaa---ggcatgactcttcctgtgtgaaaaatgcgtgcactgaacgtggcagtgtgttttgggtac-acagctaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124716434|gb|EH807836.1|EH807836
EST:     ACCATTACTAGCGGTGAAATGCCACCTAATCTTGGTCAAGCCTTCAAG                         AACCATATGAGTGAGATGTTTGCATACCATGCAACCATGATGT
genomic: ACCATTACTAGCGGTGAAATGCCACCTAATCTTGGTCAAGCCTTCAAGgtaagccacg ... gctactacagAACCATATGAGTGAGATGTTTGCATACCATGCAACCATGATGT
EST: gi|124912302|gb|EH986382.1|EH986382
EST:     AACCGATTACTAGCGGTGAAATGCCACCTAATCTTGGTCAAGCCTTCAAG                         AACCATATGAGTGAGATGTTTGCATACCA
genomic: AACC-ATTACTAGCGGTGAAATGCCACCTAATCTTGGTCAAGCCTTCAAGgtaagccacg ... gctactacagAACCATATGAGTGAGATGTTTGCATACCA