1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCCTGATGTCACAGCTGCAAGTTCTACTTCTATCACACCGATGGAAGTAGCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgtttctggtttctctcgatagaaattcattagaagcaacaaatatagttaatagatttgctttctgttttctattaatcatatag
species | Arabidopsis thaliana |
transcript | AT5G49390.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTGAGCCCTATAATCCAGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464443|gb|EG507035.1|EG507035
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464458|gb|EG507050.1|EG507050
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464454|gb|EG507046.1|EG507046
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCACGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464465|gb|EG507057.1|EG507057
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464472|gb|EG507064.1|EG507064
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464476|gb|EG507068.1|EG507068
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCAGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464489|gb|EG507081.1|EG507081
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464469|gb|EG507061.1|EG507061
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464497|gb|EG507089.1|EG507089
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464448|gb|EG507040.1|EG507040
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTTTGTTTTTCCGAG CAAGAGGTTTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464493|gb|EG507085.1|EG507085
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464478|gb|EG507070.1|EG507070
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCAGGTGTCACAGCTGCAAGTTTTGTTTTTCCGAG CAAGAGGTTTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464485|gb|EG507077.1|EG507077
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCAGGTGTCACAGCTGCAAGTTTTGTTTTTCCGAG CAAGAGGTTTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464463|gb|EG507055.1|EG507055
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464445|gb|EG507037.1|EG507037
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTTTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464456|gb|EG507048.1|EG507048
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCACGTTTTGTTTTTCCGAG CAAGAGGTTTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464467|gb|EG507059.1|EG507059
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTTTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGAEST: gi|116464446|gb|EG507038.1|EG507038
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
EST: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAG CAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
genomic: GCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgttt ... aatcatatagCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGACGAAGATGAGCTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTGATGTCACAGCTGCAAGTTCTACTTCTATCACACCGATGGAAGTAGCTGAGCCCTATAATCCTGGTGTCACAGCTGCAAGTTCTGTTTCTCCGAGgtatttgtttctggtttctctcgatagaaattcattagaagcaacaaatatagttaatagatttgctttctgttttctattaatcatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC