Sequence
atgc intronic sequence ATGC exonic sequenceGTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatcaaagtgctttatatgttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G48030.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G48030.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G00580.1 (Glycine max), 5'ss of exon 9
GTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatc-aaagtgctttatat-gttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag-----------
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ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat--taataagctctaaagtgttatctgtcactactatattgatttcactgcacctggaaatgaagttctcagccacaacccttttgcttaatgatctattacag
upper sequence: AT5G48030.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G36820.1 (Glycine max), 5'ss of exon 9
GTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatcaaagtgctttatat-gttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag-----------
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ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat--taataagctctaaaggttatctgtcactactatattgatttcactgcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacag
upper sequence: AT5G48030.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0064g01360.t01 (Vitis vinifera), 5'ss of exon 9
GTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatcaaagtgc-tttatatgttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag--
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GTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTGgtatgctta-atatctgaagtaaacaaatgtttatgattttcagattggatactaatgctttctcttctcttgtcctgtattttttt--tggcgcttctaataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125071962|gb|EL136821.1|EL136821EST: ATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTG GTGGACAAGGTGTTCCTCCTGGTACCAAACGAAGAGAAATGCAAAGCCTGT
genomic: ATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatat ... tcacattcagGTGGACAAGGTGTTCCTCCTGGTACCAAACGA-GAGAAATGCAAAGCCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatcaaagtgctttatatgttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG