1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTATCGAATAACAGAGGGTGTAAATCTGCCTTTCCGTGTATTACCAACAATCAAAGAACTTGGTCGTACACGTATGGAAGTAAATGTCAAGgtacataacttttctcaaggattacaggatacaaaaaaattggcttgatctttgctctcttacaatcccttcccgtgttttgtctgttcag
species | Arabidopsis thaliana |
transcript | AT5G46630.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGAACTTGGTCGTACACGCATGGAAGTAAATGTCAAG GTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCCCEST: gi|164110143|gb|ES078585.1|ES078585
genomic: TCAAAGAACTTGGTCGTACACGTATGGAAGTAAATGTCAAGgtacataact ... gtctgttcagGTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCCC
EST: GTAAATGTCAAG GTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCTCTTGGGGTCGTCGTTAAAEST: gi|164004224|gb|ES026281.1|ES026281
genomic: GTAAATGTCAAGgtacataact ... gtctgttcagGTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTGGTTAAA
EST: TCAAAGAACTTGGTCGTACACGCATGGAAGTAAATGTCAAG GTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTCGTTAAAEST: gi|125319833|gb|EL333918.1|EL333918
genomic: TCAAAGAACTTGGTCGTACACGTATGGAAGTAAATGTCAAGgtacataact ... gtctgttcagGTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTGGTTAAA
EST: AGTAAATGTCAAG GTCAAAAGTGTGTTTGGTGTCTAAAATGTTTGCCCTT-GGGTCGTGGTTAA
genomic: AGTAAATGTCAAGgtacataact ... gtctgttcagGTCAAAAGTGTGTTTGGTG-CTAAAATGTTTGCCCTTGGGGTCGTGGTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCGAATAACAGAGGGTGTAAATCTGCCTTTCCGTGTATTACCAACAATCAAAGAACTTGGTCGTACACGTATGGAAGTAAATGTCAAGgtacataacttttctcaaggattacaggatacaaaaaaattggcttgatctttgctctcttacaatcccttcccgtgttttgtctgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG