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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTATgtaagtgtttcactctttttcaagtctatacaagatctaaacagtatgcttctcttaacttttccttgttggtcatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G44180.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44180.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0028g03090.t01 (Vitis vinifera), 5'ss of exon 6
GTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTATgtaagtgtttca--ctctttttcaagtctatacaagatctaaacagtatgcttctcttaacttttccttgttggtcatgtag------------------------------------------------------
|| |||||||| ||||| || ||  | ||||||||||| ||||||||||||||  |||| ||||||| ||| || || |||||||||||||||   | |  |  || | |     | | ||||  ||      | | ||| | ||   |||    | ||| |  | |                                                        
GTTTGGAGATTTTTAATTACCTTTTCTGACGTTCTTGGGCTTTGGCCATTTACTATGGATGAGTTTGTTCAAGCTTTTCATGACTATgtaagtcccttagacctttgtgctgaattttgcaaggacttgct--tcttctttttttttttttaatctattgatattattataaatttattattatgtatttttcatattgcatttctgctcctgaccatttcag

upper sequence: AT5G44180.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ08459 (Selaginella moellendorffii), 5'ss of exon 9
GTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTATgtaagtgtttcactctttttcaagtctatacaagatctaaacagtatgcttctcttaacttttccttgttggtcatgtag
||||||||| |  | |  |  |||||||||||  ||||||| |||||||| || ||||| |||||||  |||||  | |||||||||||||||||     |  | ||    ||  | | |  |||  ||    |  ||   | ||                      
GTGTGGAGAATGCTCACTAACTTCGCAGACGTGATTGGTCTGTGGCCATTCACTCTGGATGAGTTTGTACAGGCGCTACATGACTATgtaagtgtgatgtttctctt----tcgctcctaactct--acttctttttttcttcaag---------------------

upper sequence: AT5G44180.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ15126 (Selaginella moellendorffii), 5'ss of exon 6
GTGTGGAGATTCTTAATCACTTTCGCAGACGTTCTTGGTCTTTGGCCATTTACCCTGGACGAGTTTGCTCAGGCATTCCATGACTATgtaagtgtttcactctttttcaagtctatacaagatctaaacagtatgcttctcttaacttttccttgttggtcatgtag
||||||||| |  | |  |  |||||||||||  ||||||| |||||||| || ||||| |||||||  |||||  | |||||||||||||||||     |  | ||    ||  | | |  ||||    || |  ||||   |                       
GTGTGGAGAATGCTCACTAACTTCGCAGACGTGATTGGTCTGTGGCCATTCACTCTGGATGAGTTTGTACAGGCGCTACATGACTATgtaagtgtgatgtttctctt----tcgctcctaactctacttcgt-tttttcttcaag----------------------