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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCCGAGGAAAGATCTTCATTATTAACCCAAAGgtacacattcttaaaattgaaaatccattagcataaaaagagacgaattagcaacattttgtggaacaaactatgctctcaggcttaaaggactcaactg...

Basic information

species Arabidopsis thaliana
transcript AT5G42870.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os11g40080.1 (Oryza sativa), 5'ss of exon 8
CAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCCGAGGAAAGATCTTCATTATTAACCCAAAGgta-cacattcttaaaattgaaaatccattagcata---aaaagagacgaattagcaacattttgtggaacaaactatgctctcaggcttaaaggactcaactg----------------------------
 || |||||||||||||| |||||||| ||||| ||||||||| | || ||||| || || || || ||    || || || || ||||| || || |||||| || ||   | | |  ||   ||| ||   | |   || | ||      || |  |||  | |||| ||  |   ||       | ||  |||     |                              
AAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGgtaacagatcacttagacagatggtcccttcctacatccaacaaagtttctctatctgcataat-tggatcaggcccagccagtgaacatattggagatggcatttagaaaatgtgtgtaaattttgtgcag

upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 15
CAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCCGAGGAAAGATCTTCATTATTAACCCAAAGgtacaca-------ttcttaaaa--ttgaaaatccattagcataaaaagagac-gaattagcaacattttgtggaacaaactatgctctcaggcttaaaggactcaactg
||  |||||||||||||||||||| || || || || ||||| || ||||||||||| || ||||| |||| |||||| |||||||||||||| || | |||| | |       || ||||||  |  ||| | | || |    | |||   |  || |      | || ||    |||||  |  ||| |   || |||  | ||    
CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATCTTCATTATTAATCCCAGGgtaaataaatcctttttttaaaaagtaaaaatttccttggtgctagaagttcctaaaatgtttgaagttcgt----caaacctt--tcttattttttaagttcgcag---

upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 14
CAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCCGAGGAAAGATCTTCATTATTAACCCAAAGgtacaca---------ttcttaaaattgaaaatc--cattagcataaaaagagacgaattagcaacattttgtggaacaaactatgctctcaggcttaaaggactcaactg
||  |||||||||||||||||||| || || || || ||||| || ||||||||||| || ||||| |||| |||||| || ||||||||||| || | |||| | |         || |||||| | |||||   | | |   || ||       || |      | || ||  |||      |  | | | | |   ||          
CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACGGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGGgtaaataaatccttcttttttaaaagtaaaaatttgcttcatgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttatttttaagttcgcag----------

upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 11
CAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCCGAGGAAAGATCTTCATTATTAACCCAAAGgtacacattcttaaaattgaaaatccat-tagcataaaaagagacgaattagcaacattttgtggaacaaactatgctctcaggcttaaaggactcaactg
||| |||||||||||||||||||||||| | ||||| |||||| | ||||||||||| || ||||| ||   ||| || || ||||| ||||| || ||||||   |     | | ||  | |    | || || ||||  |   | | | | |  | |||||| ||  |  | |  ||| |   ||    | ||  |   
CAATCCATTCTATGCTGGTTTTGGAAACCGGGACACTGATGAGTTTAGCTACCTTAAGGTTGGAATTCCAAAAGGCAAAATATTCATCATTAATCCTAAGgta---acctgcagacttctatacaggtgtaacagaaaactatgtgcactggta-taatttgtgaaa--acttctcttctgaccattttgagtctgcag--