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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGCACATGGTACAGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGgtttgtgtgactgaagttacctactctcgacactttcatgaaaacctgtgtcacatattcttataaccgttgctatcattgccag

Basic information

species Arabidopsis thaliana
transcript AT5G42320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 9
GTATTTGGCACATGGTACAGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGgtttgtgtgactgaag----ttacctactctcgacactttcatgaaaacctgtgtcacatattcttataaccgttgc-tatcattgccag
|||| |||| ||||| ||||| |||||||| || ||||||||||||| ||  |||||||| |||||||| |||||| |||  |   |      ||   |||| |   |  || || | |  | |   |   ||  |    | ||  ||    ||      |||
GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgca-gcactcttacatatgatggttccttgacttttatgcattccctgcag