Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTGAGGCGTATGATTGAAATACTAGGgtatgatcctttgttatggaattgtgatttgtagtctataatcttaggggtcagggaatatttggggtctgcaccttatggtccatcctcattctcttgc...

Basic information

species Arabidopsis thaliana
transcript AT5G35980.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35980.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 11
GGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTGAGGCGTATGATTGAAATACTAGGgtatg--atcctttgttatggaattgtgatttgtagtctataatcttaggggtcagggaatatttggggtctgcaccttatggtccatcctcattctcttgc
|||| ||||| ||||| || || ||  ||||||||||||| ||| |||| || || | ||||||||||||| | ||||   | |||||||||||||| |||||||  |  || | | | |||      ||||  | | | ||    ||    | | | |  |      ||    | |   | |   ||  |  ||   ||| 
GGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATACTTGGgtatgccactctctctcaaggaggaaacattttaattatgtagctatacaatttatgtagcaaaaaatgtg-atatcaccttgaagatatttctttctttg-

upper sequence: AT5G35980.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 8
GGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTGAGGCGTATGATTGAAATACTAGGgtatgatcctttgttatggaattgtgatttgtagtctataatcttaggggtcagggaatatttggggtctgcaccttatg-gtccatc-ctcattctcttgc
|||||||||| || || ||||| ||| ||||||| || ||||| |||||||| |||| ||||||||||||| |  | ||||| |||||  ||||||| |||||     | |   | | |  ||   |  |    | |      ||      ||      |||||    | |  | | ||   |  ||  |||||||      
GGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTAAGGCGAATGATACAAATACTTGGgtacacctcatatcttttgttttagtacctaagatgttactcattccattacatcaggcatttgaatgccgtgcatgatatatagataactcattcctaa--