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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACATCAGTTTCAGgtttgtctttacagctaagaagtttttagtttatgtgtttgatgtataaaggcggaattcaaccaaatggctatgagaagtgttggagataaaacgtatcagcaaactagttgctgtgcaagattcttatacttgcctttcttttggcatcattcag

Basic information

species Arabidopsis thaliana
transcript AT5G27030.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27030.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 10
GACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACATCAGTTTCAGgtttgtctttacagct--aagaagtttttagtttatgt---gtttgatgtataa-------aggcggaattcaaccaaatggcta-tgagaagtgttggagataaaacgtatcagcaaact-agttgctgtgcaagattcttatacttgcctttcttttggcatcattcag
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TAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAGgtttttactttcattttcaacaagtttctaatttctatactgctctttctatagtacccttagttatggtctaaccagacaataagtgtattgttatggtggtcattggtgcttgagaattcaaaccctttggaa---ttttatagtttctaatttttacag---------