Sequence
atgc intronic sequence ATGC exonic sequenceCTTTTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGgttcgttggtgttatttacaaatctgtatttcttaatcattcataaccttatatgcctgaaacattgtccctacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G26360.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G26360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os02g14929.1 (Oryza sativa), 5'ss of exon 10
CTTTTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGgttcgttggtgttatttacaaatctgtatttcttaatcattcataaccttatatgcctgaaacattgtc-cctacag
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CTTTGCCTTCATTGTTGACTGCAAAGATCCCAAAGCATGTACTGTTTTGTTGAGGGGAGCAAGCAAGGATGTCTTGAATGAGGTTGAGAGGAACTTGCAGgtgcgcttatgttttcccctgttatgc-tgttatattctatagtggaaatatatcttctaaactttctggtttgtag
upper sequence: AT5G26360.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv07s0130g00410.t01 (Vitis vinifera), 5'ss of exon 9
CTTTTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGgttcgttggtgttatttacaaatctgtat----------ttcttaatcattcataaccttatatgc-ctgaaacattgtccctacag---
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CTTTGCTTTCATTGTTGATTGCAAGGACCCAAAAGCATGTACTGTGCTGTTGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtatttttttttcttttttatttttatttaggactcaaattttcaatcaagaatgaaattatgttttctgaagcat-gtctgcatgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125149943|gb|EL182862.1|EL182862EST: TAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAG GATGCCATGTCT
genomic: TAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGgttcgttggt ... gtccctacagGATGCCATGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGgttcgttggtgttatttacaaatctgtatttcttaatcattcataaccttatatgcctgaaacattgtccctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA