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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatgattcacccttattatttcattcattttacgcaaaatattatgattcatagtatcttctctttctcag

Basic information

species Arabidopsis thaliana
transcript AT5G25980.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124997413|gb|EL069682.1|EL069682
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116446415|gb|EG489007.1|EG489007
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116446282|gb|EG488874.1|EG488874
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116446426|gb|EG489018.1|EG489018
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|125115775|gb|EL165591.1|EL165591
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAA
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAA
EST: gi|47828757|gb|CK118441.1|CK118441
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116447714|gb|EG490306.1|EG490306
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|125135435|gb|EL175758.1|EL175758
EST:     CTCTTGATGCAAATGGTCAACCCCTTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAG
EST: gi|116446304|gb|EG488896.1|EG488896
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116439131|gb|EG481723.1|EG481723
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|124972130|gb|EL045844.1|EL045844
EST:     CTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|47827929|gb|CK117613.1|CK117613
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116446293|gb|EG488885.1|EG488885
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|124860083|gb|EH944520.1|EH944520
EST:     CTCTTGATGCAAATGGTCAA-CCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116446271|gb|EG488863.1|EG488863
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
EST: gi|116444210|gb|EG486802.1|EG486802
EST:     CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCG                         TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG
genomic: CTCTTGATGCAAATGGTCAACCCCCTGGTCCACCGgtatgcatga ... tctttctcagTTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAG