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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGgtatgtaaacttggttccacatggcttgaattggttctttataagttctatatgatattcgtggaaggcttttgaattactttatagtccagaaatgtta...

Basic information

species Arabidopsis thaliana
transcript AT5G25060.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G25060.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 9
GGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGgtatgtaaacttggttccacatggcttgaattggttctttataagttctatatgatattcgtggaaggcttttgaattactttatagtccagaaatgtta------
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GGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACC---AGTCACTTCTGTTCCAAATCAAAATTCTGAGCTGgtaggttaattcaactaaatcttgtt---attatttatcta-gtgtcatagattacactattcaattccccatcgctca--tgaaaatcaaatcccattttttacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124839242|gb|EH923681.1|EH923681
EST:     AAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTG                         GTTCTTACCCCTAATGTTCCGGATAATCACTGTTGTTACCCCTGAGGACGA
genomic: AAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGgtatgtaaac ... cattgaacagGTTCTTACCCCTAATGTTCCGGATA-TCACTGTTGTTACCCCTGAGGACGA