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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAATCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGgtatacacgtgtgcagctacattaagcaaaagcacttcttgtcgatgaatagtttgtttaagttttcactcttccgtggcgcag

Basic information

species Arabidopsis thaliana
transcript AT5G24760.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24760.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 9
CGGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAATCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGgtatacacgtgtgcagctacattaagcaaaagcactt-cttgtcgatgaatagtttgtttaagttttcactcttccgtggcgcag-------------------
 || ||  ||||    || | | | || |||||  |||| ||||| || ||||| ||||||||||||||||||||| |  | || |||||  | |||||||||    |     ||| |||   ||  |    | |||   ||   |||| || ||| | ||  ||| | ||   | |   || ||                   
TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgca---acag-tacccaaaatacttcctcttatctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085430|gb|DR381189.1|DR381189
EST:     GGAAGCCTAAATCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAG                         GAGATTATGATCGATGAATTTATTACGCATAACCTGTCATTTGATGAAATC
genomic: GGAAGCCTAAATCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGgtatacacgt ... cgtggcgcagGAGATTATGATCGATGAATTTATTACGCATAACCTGTCATTTGATGAAATC