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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtatctttgtttaagatttggtattgtatatggtagaatatatttatgtatattagatgagtggtctaattgtttgaatttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G24710.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtatctttgt---tt--------aagatttggtattgtatatggtagaatatatttatgtatattagatgagtggtctaattgtttgaatttttgcag----------
|||| || || ||||| |||||||| ||||||||||| |||||||| ||||| || ||||||||||||||| ||||||| || || || || || ||||||||| ||  |   ||        || ||   |   |  ||||  || | |   || | || |     |||| |   ||   || |     |||||             
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgttcctgactttggaaggaaatatcaagctatagatattttatagtgctttcaagtttcaataatgacttacctctctgatccctcttttgttttgtgttacag

upper sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G000177_T01 (Zea mays), 5'ss of exon 9
AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtatctttgtttaagatttggtattgtatatggtagaatatatttatgtatattagatgagtggtctaattgtttgaatttttgcag---------------
| || || || ||||| ||||| || ||||||||||| |||||||| || || || ||||||||||||||| | ||||| || || || || || || |||||| | | | |    |   |     ||| | || | | || ||| | || ||  ||||     | ||  |  ||| | | ||  |                
AGCCAGTGCCTAAACTTGCTTGTCATAGTGTTGCATCGTGGTGTCATCCCCGTGCACCAAACCTTGATATTCTAACTTGTGTCAAGGACTCCCATATTTGgtatgtatttctgctctccagagacatat-tagttgcagatttttctcta-at--gatgctcattatagcttattgcactgttctatactctattattacag

upper sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 9
AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtat----ctttgtttaagatttggtattgtatatggtagaatatatttatgtatattagatga--gtggtcta-attgtttgaatttttgcag------------------------
| || || || ||| | |||||||||||||| || ||||||||||| |||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||     ||| |||    ||||||    || |   | | |||| |||   |  ||    |||   ||  ||| |||  ||  || | |  ||                        
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagttttctttctcctttggtggcttaaagtttcgtatattttttatttgatagtgtgaccatgcactatattcattatatatataaagaattttaattttaatttttgttag

upper sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G41130.1 (Glycine max), 5'ss of exon 9
AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtat----ctttgtttaagatttggtattgtatatggtagaatatatttatgtatattagatga--gtggtcta-attgtttgaatttttgcag------------------------
| || || || ||| | |||||||||||||| || |||||||| || |||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||      || |||   |||||||    |  |   |   |||| |||   |  || |  ||    ||  ||| |||  ||  ||   |  ||                        
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagtcttctttctcatttggtggctttaagttttttatattttttatttgataatgtggccatgcactatattcattatatacataaagaattttaattgaaatttttgttag