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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtattcctctctccctacatatctttttctttttgtttaattgtagctggtagtaatctttacgaaccaactcattttcaaatgcatggtcag

Basic information

species Arabidopsis thaliana
transcript AT5G23430.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 8
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtattcctct---ctccctac-atatctttttc-------tttttgtttaattgtagctggtagtaatctttacgaaccaactcattttcaa--atgcatggtcag
 |||||||| ||| |||| ||| | ||||| ||||||||||| ||||||||||| ||||  ||||| |||||||| ||  | ||||||||||||||  ||||||   |||    ||||| | | |  | |  |       | ||  ||| |||| || |     |    |||  |    ||   | |   ||  ||  ||  ||||
GGGATGGTCTAGACTGTCTGATCTAAATGTCCACGAGGGAAAACTTCTTGGTTGTTCATTTAATCAAAGTTGTGTTGGAATATGGGTTGTAGATCTAACGgtatgtttctggcttccctgctacagttctaacaccaatatattattttcattgaagttccccatttgtttttagttataatgtactaaaaaccatcaattttcag

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtat-tcctctctccctacatatctttttct--ttttgtttaattgtagctggtagtaatctt-tacgaaccaactcattttcaaatgcatggtcag
 |||||||| ||| |  | ||| ||||||| ||||||||||| ||||||||||| || | |||||| |||||||| ||  | |||||||| |||||  |||||| |   ||    |||||| | |    ||  | |  |||  || | ||   |  ||||||  || | |  |||  | |    |||  || | |||
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttgacttcagctacatttgtaacactgatctgttttccttcttgccttt--taatctaataagtaataacaaagt----aatcaattggcag

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G160702_T01 (Zea mays), 5'ss of exon 8
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtat-tcctctctccctacatatctttttctttttgtttaattgtagctggtagtaatctttacgaaccaactcattttcaaatgcatggtcag
 |||||||| ||| |  | ||| ||||||| || |||||||| ||||||||||| || | |||||| |||||||| ||  | |||||||| |||||  |||||| |   ||    |||||| | |    ||  |   |||  |  |  ||    |  | ||   |||   ||| ||     |||  || | |||
GGGATGGTCTAGACTTGCCGATTTGAATGTCCATGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttggcttcggctacatctgtaacactgatcagttacgttcaattgaatttttttttcttgaatatactaataaagtaatcaattgacag

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 9
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgta----ttcctctctccctacatatctttttctttttgtttaa---ttgtagctggtagtaatctttacgaaccaactcattttcaaatgcatggtcag--------
 || ||||| |||||||||||| | |||||||| || ||||| ||||||||||||||||||||||| || ||||| || || |||||||| ||  ||||||||      | | ||| |      || |||||||  || | | |   |||||  || ||  | |   ||| ||     || |||| | ||   ||  |          
GGGTTGGTCTAGATTGTCAGATCTTAATGTTCATGAAGGAAAACTTCTTGGTTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGgtaaatgcacttatcttcaagagaatttttttctgcttatatgaatgttgtatttgataccatttaatactaatgtg-tcttttttacatttctgacctcttgtccag

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G00890.1 (Glycine max), 5'ss of exon 9
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtat-tcctctctccctacata------tctttttctttttgtttaattgtagctggtagtaatctttacgaaccaact------cattttcaaatgcatggtcag
 || ||||| |||||||||||| | ||| |||| || ||||| |||||||| |||||||||||||| || ||||| || || |||||||| ||  ||||||||  | | ||   | || | |      |||    ||| | |     |||||  || ||  | |   ||| ||    |       |||||   |   | ||  |||
GGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGgtaaatgcacttatcttaaagagaaatttctgcggcttataggaatgttgtatttgataccatttaatactaatgtgcctttttacatttctgacctcttgtccag

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 8
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtattcctctctccctacatatctttttctt---tttg--tttaattgtagc--tggtagtaatctttacgaaccaactcattttcaaa----tgcatggtcag----------------------
 || ||||| ||||| |||||| | ||  |||| ||||||||||| || || ||||||||||| || |||||||| || || |||||||| |||||||||||||| ||   |  ||    |||| | | ||   | ||  ||| |||||  |  | | | | ||  |     |    || | |||| ||    || |||||  |                      
GGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCTCATACAACCAAAGTTGTGTTGGAGTCTGGGTTGTGGATCTCTCGgtattacttagtttctcaccatctctatattacatgtgactttgattgtttcccttgcactgatggtggtagatagtctgagtttctaactggtgtatggtttgtgacacttaacctcttgaacag

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ23110 (Selaginella moellendorffii), 5'ss of exon 8
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtat---tcctctctccctacatatc---tttttctttttgtttaattgtagctggtagtaatctttacgaaccaactcattttcaaatgcatggtcag
||| ||||||| | |  | ||  | | | ||||||| |||||||||||||| || || |  || ||||||||||| |||||||||||||| |||||  |||||    |   || |    |  | ||   |  || | || || |  ||   || |                                            
TGGCTGGTCAAAAATCGCCGACCTCAGTATTCACGAAGGAAAGCTTCTTGGCTGTTCTTTTAACCAGAGTTGTGTCGGCGTGTGGGTTGTTGATCTTACGgtaagaatttgctgttgtcaagtgtcaaataattgtgttcgtctttttactgcag--------------------------------------------